ICIS Workbook Study types

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Recommended Study Types

Study Type Description
E Experiment
G Genotype
M SMTA
N Nursery
L Linkage Map
S Survey


Genotyping Sub Types

Study Type Description Sparse
GA AFLP Genotyping study - uses the AFLP workbook
Yes
GD DArT Genotyping study - uses the DArT workbook No
GN SNP Genotyping study - uses the SNP workbook No
GS SSR Genotyping study (Allele measured by bp size) - uses the SSR workbook Yes
GB SSR Bulk Genotyping study (Allele measured by bp size) - uses the SSR Bulk workbook Yes
GP Gel based PCR Genotyping study (presence / absence of specific allele) - uses gel based PCR Genotyping study workbook Yes
GG Gene data (presence / absence of specific gene allele) - uses Gene allele study workbook Yes

Extended DMS Genotyping Sub Types

These sub types should be used when the data is not held standard DMS, but uses the extended DMS proposed for version 6.0

Study Type Description Representation Sparse
GXA AFLP Genotyping study - uses the AFLP importer G x M type Yes
GXD DArT Genotyping study - uses the DArT importer G x M type No
GXN SNP Genotyping study - uses the SNP importer G x A type No
GXS SSR Genotyping study (Allele measured by bp size) - uses the SSR importer G x A type Yes
GXB SSR Bulk Genotyping study (Allele measured by bp size) - uses the SSR Bulk importer G x A type Yes
GXP Gel based PCR Genotyping study (presence / absence of specific allele) - uses PCR Genotyping study importer G x A type Yes
GXG Gene data (presence / absence of specific gene allele) - uses Gene allele study importer G x A type Yes
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